linux - Output from a bash script looping through multiple directories -

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i trying write script loop through multiple directories. main raw_data directory contains ~150 subdirectories (subj001, subj002,...,subj00n), each of has several subdirectories.

how can make sure output script given bellow sent specific subdirectory (e.g. subj0012) input taken from, rather current directory (raw_data)?

#!/bin/bash  dir in ~raw_data/*   tractor -d -r -b preproc runstages:1  done

thank you.

the name of dir want save output in $dir, right? so, send output there via redirection:

#!/bin/bash dir in ~raw_data/* ;     tractor -d -r- b preproc runstages:1 > $dir/output done

you should make sure processing directory, though.


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